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TVIS30014027
Basic Information
VIS ID
TVIS30014027
Fusion event
HIV-NRF1 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q32.2
Reference genome
GRCh37/hg19
Start
129272535/129632694 (Hg38)
End
129272535/129632694 (Hg38)
Orient
-
Location type
Intronic
Target gene
NRF1
miRNAs that regulate target gene
hsa-mir-124-3p
;
hsa-mir-320a
;
hsa-mir-4772-5p
;
hsa-mir-3127-5p
;
hsa-mir-6823-5p
;
hsa-mir-6798-5p
;
hsa-mir-383-5p
;
hsa-mir-4801
;
hsa-mir-4731-3p
;
hsa-mir-377-3p
;
hsa-mir-5579-3p
;
hsa-mir-2115-5p
;
hsa-mir-1277-5p
;
hsa-mir-539-3p
;
hsa-mir-485-3p
;
hsa-mir-3924
;
hsa-mir-190a-3p
;
hsa-mir-5011-5p
;
hsa-mir-5580-3p
;
hsa-mir-6780a-5p
;
hsa-mir-6779-5p
;
hsa-mir-3689c
;
hsa-mir-3689b-3p
;
hsa-mir-3689a-3p
;
hsa-mir-30b-3p
;
hsa-mir-1273h-5p
;
hsa-mir-6799-5p
;
hsa-mir-6883-5p
;
hsa-mir-6785-5p
;
hsa-mir-4728-5p
;
hsa-mir-149-3p
;
hsa-mir-7106-5p
;
hsa-mir-1249-5p
;
hsa-mir-6797-5p
;
hsa-mir-765
;
hsa-mir-6133
;
hsa-mir-6130
;
hsa-mir-6129
;
hsa-mir-6127
;
hsa-mir-4510
;
hsa-mir-4419a
;
hsa-mir-4487
;
hsa-mir-4756-5p
;
hsa-mir-3192-5p
;
hsa-mir-4739
;
hsa-mir-1321
;
hsa-mir-4779
;
hsa-mir-708-5p
;
hsa-mir-3139
;
hsa-mir-28-5p
;
hsa-mir-6083
;
hsa-mir-3912-5p
;
hsa-mir-297
;
hsa-mir-223-5p
;
hsa-mir-567
;
hsa-mir-511-3p
;
hsa-mir-6834-3p
;
hsa-mir-380-3p
;
hsa-mir-4495
;
hsa-mir-379-3p
;
hsa-mir-411-3p
;
hsa-mir-7108-5p
;
hsa-mir-588
;
hsa-mir-4701-5p
;
hsa-mir-663b
;
hsa-mir-7155-3p
;
hsa-mir-3136-3p
;
hsa-mir-33a-3p
;
hsa-mir-3692-3p
;
hsa-mir-6736-5p
;
hsa-mir-4701-3p
;
hsa-mir-1262
;
hsa-mir-183-3p
;
hsa-mir-5701
;
hsa-mir-6776-5p
;
hsa-mir-140-3p
;
hsa-mir-944
;
hsa-mir-504-3p
Nearest miRNA
hsa-mir-10525/Upstream/1424751; hsa-mir-10399/Downstream/137689;
Nearest TSS
ENST00000635602/Upstream/2616;
ENST00000480018/Downstream/152491;
Nearest CpG islands
None/Target,
chr7-CpG: 39/Upstream/20094
,
chr7-CpG: 53/Downstream/129686
Nearest cancer related gene
NRF1
(TSG, No orient, 0)
Upstream sequence
tgcatttttacaaactttttctgtatatatatatgtatccactgaaaaaaaaaacaatgtttggattgcagggaaaactaaaaagtgtaatattgtttta
Downstream sequence
tatgtttttaagctttgtataagaggttaaactttattggtacatgtagttatagtttactcactttaaatgctgtaGATATTTGATATAATGgagtgtg
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
Sample Information
×
Sample type
PBMC
Gender
Female
CpG Island Information
×
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