Basic Information
VIS ID
TVIS30014041
Fusion event
HIV-chrX integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q28
Reference genome
GRCh37/hg19
Start
153162455/153897001 (Hg38)
End
153162455/153897001 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRAXE ; FRAXF
Nearest miRNA
hsa-let-7f-2/Upstream/561464; hsa-mir-1184-1/Downstream/84096;
Nearest TSS
ENST00000429181/Upstream/10827; ENST00000370049/Downstream/5530;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/10236, chrX-CpG: 46/Downstream/29014
Nearby gene
LCA10(No orient, 8028)
Upstream sequence
caaagcaacaagaaaccccagactccacttaactacacaccagcctctaatacacacacacgcatgcacacactaatggcctgacaagaagggtcatgcc
Downstream sequence
ctttttggggcataattttatgtgtatcttccccactgttctattacatataTTTACCCCAGGAGGGataaatatatatgattatttacttcttaaaata
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
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