Basic Information
VIS ID
TVIS30014044
Fusion event
HIV-CNEP1R1 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
50063436/50029525 (Hg38)
End
50063436/50029525 (Hg38)
Orient
-
Location type
Intronic
Target gene
CNEP1R1
miRNAs that regulate target gene
hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-32-5p ; hsa-mir-17-5p ; hsa-let-7f-5p ; hsa-mir-25-3p ; hsa-mir-92a-3p ; hsa-mir-363-3p ; hsa-mir-367-3p ; hsa-mir-92b-3p ; hsa-mir-578 ; hsa-mir-216b-3p ; hsa-mir-8064 ; hsa-mir-548aw ; hsa-mir-199a-3p ; hsa-mir-199b-3p ; hsa-mir-323a-3p ; hsa-mir-450b-5p ; hsa-mir-1244 ; hsa-mir-1256 ; hsa-mir-3129-5p ; hsa-mir-4642 ; hsa-mir-3655 ; hsa-mir-302c-5p ; hsa-mir-527 ; hsa-mir-518a-5p ; hsa-mir-582-5p ; hsa-mir-3143 ; hsa-mir-1468-3p ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-4699-3p ; hsa-mir-144-3p ; hsa-mir-101-3p ; hsa-mir-543
Nearest miRNA
hsa-mir-1225/Upstream/15865852; hsa-mir-11401/Downstream/263091;
Nearest TSS
ENST00000527434/Upstream/3365; ENST00000569324/Downstream/36416;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/4013, chr16-CpG: 85/Downstream/36284
Upstream sequence
TACATAGCGTAGACTCTTCTACTGAAGTGTCACCATCGAATTGCTTTTTATTTCATTGATCATCATAAGTTCTGACCAAATCATAAGAGAAACAGTATCC
Downstream sequence
TTAATTACTAAGGTTCACAATGTTTAAGAGAATTCCTCGAAGCCAGATGGCAAGCCTTCTAATTCCTGAGTCTAGTTAGTGCATTTTCCATTTAATAAAG
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
Curate