Basic Information
VIS ID
TVIS30014046
Fusion event
HIV-SAMM50 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q13.31
Reference genome
GRCh37/hg19
Start
44381365/43985485 (Hg38)
End
44381365/43985485 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA22A
Target gene
SAMM50
Nearest miRNA
hsa-mir-1281/Upstream/2062188; hsa-let-7a-3/Downstream/1215469;
Nearest TSS
ENST00000624155/Upstream/10890; ENST00000493621/Downstream/859;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/29703, chr22-CpG: 26/Downstream/10944
Upstream sequence
aggtctttgaactatccatggagttttgccttttccagacagtttgggagttgggatcatacagtttgtagccttttcaagttgtcttcttttccgtagt
Downstream sequence
aatatgcacttaaggtccctccatgtctttctgggacccaataacttgtttcttcttattgctgaataatattcctttgtctggaagtaccacagtttgt
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
Curate