Basic Information
VIS ID
TVIS30014047
Fusion event
HIV-TADA2A integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q12
Reference genome
GRCh37/hg19
Start
35818249/37458147 (Hg38)
End
35818249/37458147 (Hg38)
Orient
-
Location type
Intronic
Target gene
TADA2A
miRNAs that regulate target gene
hsa-mir-5096 ; hsa-mir-197-3p ; hsa-mir-6832-5p ; hsa-mir-411-5p ; hsa-mir-873-3p ; hsa-mir-4716-5p ; hsa-mir-4676-3p ; hsa-mir-892c-3p ; hsa-mir-452-5p ; hsa-mir-4727-5p ; hsa-mir-6873-3p ; hsa-mir-4684-5p ; hsa-mir-942-5p ; hsa-mir-6817-5p ; hsa-mir-4769-3p ; hsa-mir-1236-3p ; hsa-mir-6515-3p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-153-5p ; hsa-mir-487a-3p ; hsa-mir-154-3p ; hsa-mir-302f ; hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-6875-3p ; hsa-mir-3145-3p ; hsa-mir-6756-3p ; hsa-mir-3127-3p ; hsa-mir-541-5p ; hsa-mir-335-3p ; hsa-mir-511-5p ; hsa-mir-664b-3p ; hsa-mir-579-3p ; hsa-mir-5696 ; hsa-mir-4711-3p ; hsa-mir-6830-3p ; hsa-mir-6866-3p ; hsa-mir-188-5p
Nearest miRNA
hsa-mir-1180/Upstream/424334; hsa-mir-10226/Downstream/156784;
Nearest TSS
ENST00000595228/Upstream/7582; ENST00000616284/Downstream/3673;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/51180, chr17-CpG: 148/Downstream/31037
Upstream sequence
gttatttttcctgatcctctccctcctcccaccctccaccctctgataggccctagtgtgtgttgttcccctctatgtgtccgtgtgttctcatcattta
Downstream sequence
gctcccgcttataagtgagaacatgtggtatttggttttctgttcctgtgttagtttgctaaggataatggcctctagctccattcatgtcctggcaaag
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
Curate