Basic Information
VIS ID
TVIS30014054
Fusion event
HIV-chr11 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q12.3
Reference genome
GRCh37/hg19
Start
63335861/63568389 (Hg38)
End
63335861/63568389 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA11H
Nearest miRNA
hsa-mir-129-2/Upstream/775618; hsa-let-7a-2/Downstream/773460;
Nearest TSS
ENST00000527297/Upstream/5006; ENST00000542805/Downstream/30326;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/77057, chr11-CpG: 73/Downstream/45282
Nearby gene
PLAAT2(No orient, 5006)
Nearest cancer related gene
PLAAT2(TSG, No orient, 5006)
Upstream sequence
tacagtcatgacagaaggcaaaggagaagcaggcaccttcttcacagggcagcaggatggagtgagtgcaagcaggggaaatgccagattcttataaaac
Downstream sequence
caccagattggccgggtgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcaggcggatcacgaggtcaagagatcaagaccatcctga
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
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