Basic Information
VIS ID
TVIS30014058
Fusion event
HIV-chr7 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
54816286/54748593 (Hg38)
End
54816286/54748593 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA7A
Nearest miRNA
hsa-mir-1183/Upstream/9866793; hsa-mir-10399/Downstream/2207192;
Nearest TSS
ENST00000635602/Upstream/169799; ENST00000439413/Downstream/10589;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/50649, chr7-CpG: 63/Downstream/10295
Nearby gene
SEC61G(No orient, 3654)
Upstream sequence
gagcatttttataaagcaaagaatccaaggcccaacatctagagatgctgatgtggtagatctaaggtggggcAAGTGCCCATGTGAGTCTCATATTTGA
Downstream sequence
GAAAGGTGGAAAGCACTGGTCAGTGAAGATGAGACTGGGTAATCCTATAAGAAGCTGACAATATTAATAATAATACACACAAAAGTTACAAATGTTAGGT
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
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