Basic Information
VIS ID
TVIS30014062
Fusion event
HIV-POMT1 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q34.13
Reference genome
GRCh37/hg19
Start
134382566/131507179 (Hg38)
End
134382566/131507179 (Hg38)
Orient
-
Location type
Intronic
Target gene
POMT1
Nearest miRNA
hsa-let-7a-1/Upstream/880816; hsa-mir-126/Downstream/1438528;
Nearest TSS
ENST00000422679/Upstream/4170; ENST00000462375/Downstream/1747;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/3774, chr9-CpG: 24/Downstream/21751
Upstream sequence
aaaagaaaaaagaaaaCAGGGAGGGTAAATATGTATAAGTAAGGCGGTAAATTTTAGAATCCTTAGTCCTGTCTATGCTTCATGAGATCGGGTTCCATGA
Downstream sequence
CTATGCAAAGCTAATTTCAAAGCCTTCACCCATAGTTTATGCACTCTGCTGCTGATGGGGTCCCCAGTTTTGTAAACGTGCATTTTAGAGTCTGTGAACA
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
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