Basic Information
VIS ID
TVIS30014065
Fusion event
HIV-chr10 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q11.22
Reference genome
GRCh37/hg19
Start
47572785/46201549 (Hg38)
End
47572785/46201549 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA10G
Nearest miRNA
hsa-mir-1265/Upstream/1037461; hsa-mir-107/Downstream/2783963;
Nearest TSS
ENST00000439456/Upstream/155280; ENST00000610892/Downstream/84796;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/70202, chr10-CpG: 62/Downstream/81121
Nearby gene
ANTXRLP1(No orient, 17476)
Upstream sequence
TATTTGAGTTGAAACTGGTAGAATCTTAGTAAAACTATAACAATAAGAAATTTTTATATTATATATGTAATATACAATAATCACATTTAATTCCATTTGT
Downstream sequence
TAGTCTATTCTGATTCTTTAGCAGGTTGATTCATAATTTACCAACTTGGATCAGAAATATTTTCTATTCTTAGCTTTTGCTGTCAGCAGAGATAATAATA
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
Curate