Basic Information
VIS ID
TVIS30014067
Fusion event
HIV-chr16 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p12.1
Reference genome
GRCh37/hg19
Start
25088261/25076940 (Hg38)
End
25088261/25076940 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA16E
Nearest miRNA
hsa-mir-1225/Upstream/873709; hsa-mir-11401/Downstream/948297;
Nearest TSS
ENST00000527434/Upstream/10003; ENST00000570981/Downstream/34789;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/9729, chr16-CpG: 58/Downstream/29730
Nearby gene
LCMT1-AS1(No orient, 23624)
Upstream sequence
atcaagatttcaacttctggccggctacagtggctcatgtctataatcccagcactttgggaggctgagaccaggcaggcagatcatttgagttcaggaa
Downstream sequence
tttgagattagcctggctaaaatggtgaaactccacctctactaaaactacaaaaattagccaggtgtggtggtgtgtgcctgtaatcccagctactaga
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
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