Basic Information
VIS ID
TVIS30014072
Fusion event
HIV-chr17 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
p13.1
Reference genome
GRCh37/hg19
Start
8071356/8168038 (Hg38)
End
8071356/8168038 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1253/Upstream/22967; hsa-mir-10226/Downstream/18907;
Nearest TSS
ENST00000595228/Upstream/4492; ENST00000581248/Downstream/8278;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/4862, chr17-CpG: 55/Downstream/8134
Nearby gene
TMEM107(No orient, 4941)
Upstream sequence
agcttcatttccacacaggcAACATAAGCAGCTGCAGGCTCACATTTGTTTAAAATGTTATAGTTTTATATatatttatatctagtttatagagatgggg
Downstream sequence
ggggtctcaccatgttttccagactggtctcaaacttttggcctcaagtgatcctccggccttagccccgcaaagtgctgggattacaggtgtgagctac
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
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