Basic Information
VIS ID
TVIS30014075
Fusion event
HIV-chr6 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p22.2
Reference genome
GRCh37/hg19
Start
26142746/26142518 (Hg38)
End
26142746/26142518 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA6C
Nearest miRNA
hsa-mir-3691/Upstream/7570638; hsa-mir-10398/Downstream/1005108;
Nearest TSS
ENST00000381078/Upstream/18315; ENST00000304218/Downstream/13836;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/17964, chr6-CpG: 56/Downstream/13703
Nearby gene
HIST1H1E(No orient, 13813)
Upstream sequence
ACTACATGTAATTgatccatttctaagctcattcacgtgattcagtgaatacaattctttccagggctgttaggccaaaggcctcaaatccctatgtggg
Downstream sequence
cctctccacaggagagtgcaccacatggcagctgactttcttccaaaacaatgagcaagtgagagggcccaagaaagaagccataaccatgtgtaaccta
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
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