VISDB Viral Integration Site DataBase

VIS ID

TVIS30014079

Fusion event

HIV-C19orf47 integration

Validated

Yes

Detection method

invPCR

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2007

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

q13.2

Reference genome

Start

End

40799413/40293506 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-128-3p ; hsa-mir-4665-5p ; hsa-mir-1275 ; hsa-mir-6763-5p ; hsa-mir-3150a-3p ; hsa-mir-491-5p ; hsa-mir-4697-3p ; hsa-mir-5010-5p ; hsa-mir-4525 ; hsa-mir-625-5p ; hsa-mir-939-5p ; hsa-mir-1343-5p ; hsa-mir-3175 ; hsa-mir-6780b-5p ; hsa-mir-4725-3p ; hsa-mir-4271 ; hsa-mir-5196-5p ; hsa-mir-4747-5p ; hsa-mir-3202 ; hsa-mir-4745-5p ; hsa-mir-4481 ; hsa-mir-5008-5p ; hsa-mir-7515 ; hsa-mir-5693 ; hsa-mir-4756-5p ; hsa-mir-1321 ; hsa-mir-4739 ; hsa-mir-887-5p ; hsa-mir-6738-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-183-5p ; hsa-mir-5001-3p ; hsa-mir-4727-5p ; hsa-mir-6793-5p ; hsa-mir-152-5p ; hsa-mir-4650-3p ; hsa-mir-23b-5p ; hsa-mir-23a-5p ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-6878-5p ; hsa-mir-4480 ; hsa-mir-6817-5p ; hsa-mir-4769-3p ; hsa-mir-3614-5p ; hsa-mir-3922-5p ; hsa-mir-6831-5p ; hsa-mir-3927-3p ; hsa-mir-4717-5p ; hsa-mir-4753-5p ; hsa-mir-4796-3p ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-4458 ; hsa-let-7i-5p ; hsa-let-7g-5p ; hsa-let-7f-5p ; hsa-let-7a-5p ; hsa-mir-4500 ; hsa-let-7e-5p ; hsa-let-7d-5p ; hsa-let-7c-5p ; hsa-let-7b-5p ; hsa-mir-98-5p ; hsa-mir-8070 ; hsa-mir-6848-3p ; hsa-mir-6843-3p ; hsa-mir-3187-3p ; hsa-mir-4435 ; hsa-mir-588 ; hsa-mir-4701-5p ; hsa-mir-548s ; hsa-mir-640 ; hsa-mir-378a-5p ; hsa-mir-6131 ; hsa-mir-4755-3p ; hsa-mir-6759-3p ; hsa-mir-3663-5p ; hsa-mir-3653-5p ; hsa-mir-1303 ; hsa-mir-193b-5p ; hsa-mir-197-3p ; hsa-mir-3149 ; hsa-mir-411-5p ; hsa-mir-483-5p ; hsa-mir-5096 ; hsa-mir-6832-5p

Nearest miRNA

hsa-mir-10395/Upstream/10865; hsa-let-7e/Downstream/76340;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/7806, chr19-CpG: 66/Downstream/54767

Nearby gene

AKT2(No orient, 8111)

Upstream sequence

aagtgctgggattacaggcatgagccaccgtgcccagcaattttttgctactttttgtttgtttttgttttgtttctgagacagagtcttgctctgttgc

Downstream sequence

ccaggctggagtgcaatgatgcgatcttggctcactgcaacctccgcttcccgggttcaagcgattctcctgcctcagcctcctgagtagctgggattac