VISDB Viral Integration Site DataBase

VIS ID

TVIS30014083

Fusion event

HIV-RPS6KA4 integration

Validated

Yes

Detection method

invPCR

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2007

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr11

Cytoband

q13.1

Reference genome

Start

End

64132547/64365075 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-423-5p ; hsa-mir-3184-5p ; hsa-mir-4665-5p ; hsa-mir-1275 ; hsa-mir-4472 ; hsa-mir-4447 ; hsa-mir-4525 ; hsa-mir-5010-5p ; hsa-mir-7111-5p ; hsa-mir-6870-5p ; hsa-mir-5698 ; hsa-mir-4723-5p ; hsa-mir-625-5p ; hsa-mir-4283 ; hsa-mir-6825-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-4795-5p ; hsa-mir-148b-3p ; hsa-mir-152-3p ; hsa-mir-148a-3p ; hsa-mir-1296-3p ; hsa-mir-6813-5p ; hsa-mir-6085 ; hsa-mir-6750-3p ; hsa-mir-302c-3p ; hsa-mir-520f-3p ; hsa-mir-93-5p ; hsa-mir-1231 ; hsa-mir-204-3p ; hsa-mir-2110 ; hsa-mir-2114-5p ; hsa-mir-3120-5p ; hsa-mir-3125 ; hsa-mir-3150a-3p ; hsa-mir-3189-3p ; hsa-mir-3192-5p ; hsa-mir-342-5p ; hsa-mir-3916 ; hsa-mir-4314 ; hsa-mir-4450 ; hsa-mir-4481 ; hsa-mir-450a-2-3p ; hsa-mir-4646-5p ; hsa-mir-4651 ; hsa-mir-4664-5p ; hsa-mir-4745-5p ; hsa-mir-4772-5p ; hsa-mir-4780 ; hsa-mir-608 ; hsa-mir-619-5p ; hsa-mir-623 ; hsa-mir-6506-5p ; hsa-mir-6737-5p ; hsa-mir-6742-5p ; hsa-mir-6747-5p ; hsa-mir-6756-5p ; hsa-mir-6763-5p ; hsa-mir-6766-5p ; hsa-mir-6780b-3p ; hsa-mir-6810-5p ; hsa-mir-6812-5p ; hsa-mir-6819-5p ; hsa-mir-6857-5p ; hsa-mir-6859-5p ; hsa-mir-6881-5p ; hsa-mir-6886-5p ; hsa-mir-6888-3p ; hsa-mir-6888-5p ; hsa-mir-8080 ; hsa-mir-92a-2-5p

Nearest miRNA

hsa-mir-129-2/Upstream/23171; hsa-let-7a-2/Downstream/3527;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/5587, chr11-CpG: 48/Downstream/3268

Upstream sequence

ctcctgacctcaggtgatccagctgccttggcctcccaaaatcctgggatcacaggcatgagccaccacgcccgaccttttcacaccaattctattaaaa

Downstream sequence

gttccagaactgactaagtgtggtgtcatggtggttctctaaggggaatagggattgtgttaccagagggagagagaagccagggaggcaggaggaacag