Basic Information
VIS ID
TVIS30014087
Fusion event
HIV-NBPF20 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
145244933/146193268 (Hg38)
End
145244933/146193268 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA1F
Target gene
NBPF20
Nearest miRNA
hsa-mir-101-1/Upstream/342623; hsa-mir-1182/Downstream/2141211;
Nearest TSS
ENST00000473358/Upstream/45514; ENST00000622359/Downstream/20303;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/140685, chr1-CpG: 98/Downstream/34821
Upstream sequence
ATTCATTTTTGCTCCTGAGTAAAGCCACGAGTCTCAAGATTATTTTTCTTTTTTAAAAATTAGaattgtcagtttatagttgtatacatttatagggtac
Downstream sequence
aaagtgatgttataatttgctaatacaatgtagaacaattaaaaggtagttagtatatcctttatctcaaatatttaacattttttgaaatttactctct
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
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