Basic Information
VIS ID
TVIS30014099
Fusion event
HIV-LOC100294145 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p21.32
Reference genome
GRCh37/hg19
Start
32870468/32902691 (Hg38)
End
32870468/32902691 (Hg38)
Orient
-
Location type
ncRNA_exonic
Fragile sites / regions
FRA6H
Target gene
LOC100294145
Nearest miRNA
hsa-mir-1236/Upstream/152712; hsa-mir-10398/Downstream/305144;
Nearest TSS
ENST00000381078/Upstream/46594; ENST00000584808/Downstream/34195;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/7683, chr6-CpG: 75/Downstream/65428
Upstream sequence
TTTTTCTCAGCACTCTCTTGAAAACAGGTGACAGTGGAACCCTGTTAGGTTCACAAATCCTAGACTTTGATTATATAGCCCAGGCTCAAATTTTTCTCGA
Downstream sequence
ATGTTACGAACATTCAAAGCATTAGGAGTCTTGGTTTCATTTCTTAATTTTTTTTCTTCTGGGTATATTTGAGACTCATCTTGGATTCAAATAAATTAAT
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
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