Basic Information
VIS ID
TVIS30014100
Fusion event
HIV-COX5A integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
75225931/74933590 (Hg38)
End
75225931/74933590 (Hg38)
Orient
-
Location type
Intronic
Target gene
COX5A
miRNAs that regulate target gene
hsa-mir-484 ; hsa-mir-324-5p ; hsa-mir-100-5p ; hsa-mir-20a-5p ; hsa-mir-26b-5p ; hsa-mir-26a-5p
Nearest miRNA
hsa-mir-10393/Upstream/92883; hsa-mir-11181/Downstream/420021;
Nearest TSS
ENST00000557528/Upstream/26469; ENST00000568119/Downstream/4186;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/26437, chr15-CpG: 91/Downstream/3851
Upstream sequence
ATCTAATGCACTATTATCAAGAACTTAGGGCCAGATGCAGTGgcactagcctcggagacagagtgagaccctgtctcaaaaaagaaaaaaTTATAAGCCA
Downstream sequence
CCTCTTCAAAAACTAAAGCTAGCCTTAACTGAatactgaaagtgcaagtataaaatgatacaatcactttggaagacggtttaagcagtttcttatcaag
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
Curate