Basic Information
VIS ID
TVIS30014105
Fusion event
HIV-BANP integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
88024922/87991316 (Hg38)
End
88024922/87991316 (Hg38)
Orient
-
Location type
Intronic
Target gene
BANP
miRNAs that regulate target gene
hsa-mir-320a ; hsa-mir-4283 ; hsa-mir-25-5p ; hsa-mir-423-5p ; hsa-mir-3184-5p ; hsa-mir-4285 ; hsa-mir-6813-5p ; hsa-mir-6085 ; hsa-mir-1286 ; hsa-mir-5681a ; hsa-mir-371a-5p ; hsa-mir-3619-5p ; hsa-mir-761 ; hsa-mir-214-3p ; hsa-mir-6165 ; hsa-mir-888-5p
Nearest miRNA
hsa-mir-11401/Upstream/137352; hsa-mir-4722/Downstream/477602;
Nearest TSS
ENST00000527434/Upstream/8698; ENST00000497491/Downstream/25874;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/1339, chr16-CpG: 247/Downstream/7234
Nearest cancer related gene
BANP(OG, No orient, 0)
Upstream sequence
CACATAATTGTATGGTACAGTTTACATACCTACAACTTCGGGAATTATTCACATAATTGTATGATACAGTTTACATACATACAACTTCGGGAATTATTAA
Downstream sequence
CATAATCATATGCTTTAGAGATACAATCTAATAACCAAACTAATGAGAAACATAAATTTAAATGTTGTAATGATTATGCACATTCTAATAATTTGGAGCA
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
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