Basic Information
VIS ID
TVIS30014111
Fusion event
HIV-FAM13B integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q31.2
Reference genome
GRCh37/hg19
Start
137315783/137980094 (Hg38)
End
137315783/137980094 (Hg38)
Orient
-
Location type
Intronic
Target gene
FAM13B
miRNAs that regulate target gene
hsa-mir-373-3p ; hsa-mir-218-5p ; hsa-mir-19a-5p ; hsa-mir-19b-1-5p ; hsa-mir-19b-2-5p ; hsa-mir-579-3p ; hsa-mir-2052 ; hsa-mir-664b-3p ; hsa-mir-190b ; hsa-mir-190a-5p ; hsa-mir-6830-5p ; hsa-mir-136-5p ; hsa-mir-4713-5p ; hsa-mir-550b-3p ; hsa-mir-2116-3p ; hsa-mir-532-3p ; hsa-mir-150-5p ; hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-6875-3p ; hsa-mir-1238-3p ; hsa-mir-670-3p ; hsa-mir-6749-3p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-222-5p ; hsa-mir-545-5p
Nearest miRNA
hsa-mir-10397/Upstream/332445; hsa-mir-103a-1/Downstream/2583577;
Nearest TSS
ENST00000502646/Upstream/25470; ENST00000500267/Downstream/52680;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/90306, chr5-CpG: 65/Downstream/52322
Upstream sequence
ctactaaaaaaaaaaaaaaaaaaaaaaaattagccgggcgtggtggcacatgcctgtaatcccaggtacacaagaggctgaggcaggagaatcacttgaa
Downstream sequence
cctaggagacggaggttgcactgagcccacatcacacgactgcactctagccggggcgacaagaatgaaactccgtctcaagaaaaaaaaaaaaaagaaa
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
Curate