Basic Information
VIS ID
TVIS30014140
Fusion event
HIV-chr4 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
p11
Reference genome
GRCh37/hg19
Start
49644730/49642713 (Hg38)
End
49644730/49642713 (Hg38)
Orient
+
Nearest miRNA
hsa-mir-12113/Upstream/1989970; hsa-mir-1243/Downstream/3069969;
Nearest TSS
ENST00000502981/Upstream/614021; ENST00000504661/Downstream/2200287;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/118044, chr4-CpG: 177/Downstream/2199888
Upstream sequence
gagtggaatggaatagaatggaatggaatggaatggaatggaatggaatggaatagaatggaatggaatggaatggaatggaatggaatggaatggaatg
Downstream sequence
gaatagaatgaaatggaaaggaatggaatggaaacaacccgagtggaatggaatggaatggaatggaaaggaatggaatggaacagtacggaatgaaatg
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
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