Basic Information
VIS ID
TVIS30014146
Fusion event
HIV-ZGPAT integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
q13.33
Reference genome
GRCh37/hg19
Start
62347920/63716568 (Hg38)
End
62347920/63716568 (Hg38)
Orient
-
Location type
Intronic
Target gene
ZGPAT
Nearest miRNA
hsa-mir-1-1/Upstream/429702; hsa-mir-1914/Downstream/202881;
Nearest TSS
ENST00000382410/Upstream/7479; ENST00000484569/Downstream/13809;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/7646, chr20-CpG: 22/Downstream/18329
Upstream sequence
tccactttctctcttggttttagcaatttgagtcatctcttttcttcctctttttttttttttgagatggagtctcactgtgtcacccaggctggagtgc
Downstream sequence
agtggcatgatcttggctcactgcaacccctgcctcccaggttcaagcaattctgccttagcctcctgagtagctgggattacaggtgtgagccaccaca
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
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