Basic Information
VIS ID
TVIS30014147
Fusion event
HIV-chr10 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q23.31
Reference genome
GRCh37/hg19
Start
91601309/89841552 (Hg38)
End
91601309/89841552 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA10D
Nearest miRNA
hsa-mir-107/Upstream/248725; hsa-mir-1287/Downstream/6222763;
Nearest TSS
ENST00000439456/Upstream/11996; ENST00000629067/Downstream/12354;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/3517, chr10-CpG: 137/Downstream/1015511
Nearby gene
LINC00865(No orient, 691)
Upstream sequence
taaacaagttgtacatgttgCTtttttttctatagcaatatcaccattcaaaatactgtatattttacttattAAATTTGCCTTAAAATTtttttatatt
Downstream sequence
atttttgttttaggttcagggggtacctgcgcgtgtttattacatggatatgttgtataatggtggggtttggacttctaatgcacccaccactcaaata
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
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