Basic Information
VIS ID
TVIS30014148
Fusion event
HIV-chr7 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p21.1
Reference genome
GRCh37/hg19
Start
17235000/17195376 (Hg38)
End
17235000/17195376 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC101927609 ; LOC107986772
Nearest miRNA
hsa-mir-339/Upstream/10128331; hsa-mir-10399/Downstream/931844;
Nearest TSS
ENST00000635602/Upstream/63186; ENST00000475440/Downstream/85927;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/343913, chr7-CpG: 107/Downstream/103252
Nearby gene
AHR(No orient, 103276)
Upstream sequence
GAAGTGCTATGTTTTTATCCCCAGGTAGGAGCAAACTATGCAGGGCACCAGCTGGTTTGGGCCCCTCTGCGGTGGCATCCCAAATGGAGCTCCTTTTCTC
Downstream sequence
TAAGCATTTAGTGACTACATGCTGCTTGTCCCACAGGGAAAAAAGTGGGTCATAAAACTTGTTTTCTGTTTCCTAAAATGCCTAATAAAATGCTTTCACA
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
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