Basic Information
VIS ID
TVIS30014152
Fusion event
HIV-LIX1L integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q21.1
Reference genome
End
145488885/145946200 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-101-1/Upstream/95555; hsa-mir-1182/Downstream/2388279;
Upstream sequence
cttgaactctggaggcggagattgcagtgatctgagattgcaccacggcactctagcctgggcaacagagtgagactctggctcaaaaaaaaaaaaaaaa
Downstream sequence
agaaCTTCAGTCATTTCAGAGAAATAACTATATACCCAAGATGACAAATGTTTATGCTTTCACTTGTTtttttttgtttttttgtttttttgttttttga
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
Curate