Basic Information
VIS ID
TVIS30014156
Fusion event
HIV-LOC105372577 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
p11.21
Reference genome
GRCh37/hg19
Start
24299215/24318579 (Hg38)
End
24299215/24318579 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105372577
Nearest miRNA
hsa-mir-103a-2/Upstream/5847888; hsa-mir-1-1/Downstream/1889607;
Nearest TSS
ENST00000382410/Upstream/493; ENST00000482637/Downstream/150620;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/329783, chr20-CpG: 176/Downstream/150629
Nearby gene
LINC01721(No orient, 93991)
Upstream sequence
cttgagcccaggaggtcgaggctccagtgagccatgaacgtgccagtgtcccacagcctggccaacatagtaagaccctgtctcaaaaaaaaaaaGACAA
Downstream sequence
CCCCCCGCCCCCGGAAACCCGGTGTCATCACTCCAACCTGGCCCTGTTGGCCACCATGCCTGACACTAGAGAAACGCtgccttcattagcgttccccaga
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
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