Basic Information
VIS ID
TVIS30014163
Fusion event
HIV-SPECC1L-ADORA2A integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q11.23
Reference genome
GRCh37/hg19
Start
24707003/24311035 (Hg38)
End
24707003/24311035 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
SPECC1L-ADORA2A
Nearest miRNA
hsa-mir-1286/Upstream/1424656; hsa-let-7a-3/Downstream/1144611;
Nearest TSS
ENST00000624155/Upstream/6639; ENST00000472799/Downstream/101125;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/39528, chr22-CpG: 131/Downstream/112534
Upstream sequence
gtttgatatggtgtgaaataggtctcagcatttatttttgcccccttggtgtatacacttgacctagcaccattttctggaaaactcttgttttctccct
Downstream sequence
tgctgccttggttataaatcaagtgtctataaatatgcagtttctttatggactctgtttcactagtttattcttgttccagtgctgtactgtcttaatc
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
Curate