Basic Information
VIS ID
TVIS30014166
Fusion event
HIV-WDR82 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p21.2
Reference genome
GRCh37/hg19
Start
52299535/52265519 (Hg38)
End
52299535/52265519 (Hg38)
Orient
+
Location type
Intronic
Target gene
WDR82
miRNAs that regulate target gene
hsa-mir-30a-5p ; hsa-mir-30a-3p ; hsa-mir-92b-3p ; hsa-mir-17-5p ; hsa-mir-155-5p ; hsa-mir-193b-3p ; hsa-mir-193a-3p ; hsa-mir-1207-5p ; hsa-mir-30b-5p ; hsa-mir-30c-5p ; hsa-mir-30d-5p ; hsa-mir-30e-5p ; hsa-mir-3910 ; hsa-mir-4302 ; hsa-mir-4711-5p ; hsa-mir-4747-5p ; hsa-mir-4763-3p ; hsa-mir-5094 ; hsa-mir-5196-5p ; hsa-mir-541-3p ; hsa-mir-605-3p ; hsa-mir-654-5p ; hsa-mir-6721-5p ; hsa-mir-6733-3p ; hsa-mir-6879-5p ; hsa-mir-9500 ; hsa-mir-129-5p ; hsa-mir-19a-5p ; hsa-mir-19b-1-5p ; hsa-mir-19b-2-5p ; hsa-mir-3672 ; hsa-mir-4423-5p ; hsa-mir-6501-5p ; hsa-mir-6864-3p ; hsa-mir-6885-3p ; hsa-mir-744-3p ; hsa-mir-8055
Nearest miRNA
hsa-mir-12127/Upstream/1590356; hsa-let-7g/Downstream/2759;
Nearest TSS
ENST00000440867/Upstream/16558; ENST00000473583/Downstream/2619;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/19395, chr3-CpG: 97/Downstream/12534
Upstream sequence
CATTTGTGAACATTAATTTGAATAAAAACAAGCAAAACATCTACTTATCATGAGCCATCCTTTGTCTGAAACCAGTTACCACTGGTTGCCACCTTATTTC
Downstream sequence
ACCTTTATTTCAGCAACACAAATGGCCTGCCCAACTGGAAGTGCAACtttttttttttttttttttttttgagacagggtcttgctctgtcacccaggct
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
Curate