Basic Information
VIS ID
TVIS30014167
Fusion event
HIV-GNB1 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p36.33
Reference genome
End
1754772/1823333 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-12136/Upstream/483625; hsa-mir-101-1/Downstream/1304642;
Upstream sequence
tgtctccagaaaaaaaaaaaaaaaaaaaaaaaaaTCTGATTTCTATAAGATGAAATATAGTCTCAAAAGCAGGTGGTAAAGAGCTGAGAGTGTTCTGAAC
Downstream sequence
CCCCCCAAAAACCCAGTTAGATTATTATTAAATAACAACACTTTGCTTTTCTTTTTTACTTGCCAAAAACCATGCTGACTTAAAATGAACAGCAGAAGCT
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
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