Basic Information
VIS ID
TVIS30014168
Fusion event
HIV-INTS6L integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q26.3
Reference genome
GRCh37/hg19
Start
134700377/135566452 (Hg38)
End
134700377/135566452 (Hg38)
Orient
-
Location type
Intronic
Target gene
INTS6L
Nearest miRNA
hsa-let-7f-2/Upstream/1019741; hsa-mir-105-1/Downstream/984426;
Nearest TSS
ENST00000429181/Upstream/45459; ENST00000481429/Downstream/13433;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/44250, chrX-CpG: 93/Downstream/407060
Upstream sequence
CTTAGTAGCTCTCGAAGGCACTGCTATATTATACTAAGAAGGCTATTGTATAATTTTGCAGTTTTAGTGGACAgggacagttagtaaaagggcaagttaa
Downstream sequence
gttacacagactacataagtccagaagcatcactatattactgcatagtacagtaattgttcataacagtgtccctTGTTTTCTTTTTATTAATACCAGA
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
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