Basic Information
VIS ID
TVIS30014170
Fusion event
HIV-chr14 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
38533349/38064144 (Hg38)
End
38533349/38064144 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-208a/Upstream/1111753; hsa-mir-1185-1/Downstream/9696851;
Nearest TSS
ENST00000550708/Upstream/59297; ENST00000555655/Downstream/27014;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/441173, chr14-CpG: 43/Downstream/143805
Nearby gene
SSTR1(No orient, 143855)
Upstream sequence
attcccttccaaagaagttgtgataatgtgtacattcactgtctgtgtgtgataattcctgtttcctcacgaacttgccaaggctgtatactatcaaact
Downstream sequence
attgccaatttggcagctaaaaaatactatctttattttgccttaatttgcatttatttatgagaagaattgggcatccttccatctgcttataagccat
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
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