Basic Information
VIS ID
TVIS30014193
Fusion event
HIV-chr22 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q11.21
Reference genome
GRCh37/hg19
Start
19844918/19857395 (Hg38)
End
19844918/19857395 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-3198-1/Upstream/1876434; hsa-let-7a-3/Downstream/106358;
Nearest TSS
ENST00000624155/Upstream/2456; ENST00000467943/Downstream/23759;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/1908, chr22-CpG: 68/Downstream/49465
Nearby gene
GNB1L(No orient, 2456)
Upstream sequence
cagttcaggagcattaagtacattcatgctgttgtatatccagtgatcactatttatttctagaactttttcttcactccagaacattaactcctcttcc
Downstream sequence
cctcccactcgcaacccctggtaaccatcattctatattctgtctctgtgaatttaattactctaggtacctcatataagtggaatcatacagtatttat
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
Curate