Basic Information
VIS ID
TVIS30014194
Fusion event
HIV-chr4 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
p15.1
Reference genome
GRCh37/hg19
Start
29780119/29778497 (Hg38)
End
29780119/29778497 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA4D
Nearest miRNA
hsa-mir-12113/Upstream/958829; hsa-mir-1243/Downstream/6647869;
Nearest TSS
ENST00000502981/Upstream/564099; ENST00000507864/Downstream/941918;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/2916881, chr4-CpG: 55/Downstream/499602
Nearby gene
PCDH7(No orient, 941911)
Upstream sequence
acacgctgggaattcattcccctgtgtggtggtgtagggagttgattaggttgttaagagggaataatgtcactctcacaggactgggttaattctgcag
Downstream sequence
gaacgtgtgggttctcacactcctgggactggattagtgacctagaaagcagagtattataaggctaggctgttgctcgtgttttgatcctgttgcatga
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
Curate