Basic Information
VIS ID
TVIS30014211
Fusion event
HIV-LINC00471 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q37.1
Reference genome
GRCh37/hg19
Start
232376791/231512080 (Hg38)
End
232376791/231512080 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
LINC00471
Nearest miRNA
hsa-mir-10b/Upstream/149287; hsa-mir-1244-1/Downstream/201234;
Nearest TSS
ENST00000437798/Upstream/28439; ENST00000313965/Downstream/2259;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/27925, chr2-CpG: 88/Downstream/2157
Upstream sequence
ggatgaaatgaaccaatgtataaagcagtggtcccaaacctttttggcaccagggaccggttttgtggatgacaatttttcatgcatccggtgggagggg
Downstream sequence
agagggatgattcaagtacattacattgattgtgcactttatttctgttattacattgtaatatataatgaaatacaactcaacataatgtagaatcagt
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
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