Basic Information
VIS ID
TVIS30014219
Fusion event
HIV-chr1 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q42.13
Reference genome
End
228689279/228501578 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
Nearest miRNA
hsa-mir-101-1/Upstream/39426; hsa-mir-1182/Downstream/2518250;
Nearby gene
RNF187(No orient, 5390)
Upstream sequence
gctgacttcccacatggccagtcttagtctccagcctcagaggaagtcgaactgcaggactcaaagggcccctaccgcacatcacattgctgccgctgga
Downstream sequence
cttggctcagggactcccgcccccatgtcacagtgttctcttcagtgcagccaacctaccctaaaccacattatgggactgtccagtgtgacccaaggcc
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
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