Basic Information
VIS ID
TVIS30014227
Fusion event
HIV-FNBP1 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q34.11
Reference genome
GRCh37/hg19
Start
132650146/129887867 (Hg38)
End
132650146/129887867 (Hg38)
Orient
+
Location type
UTR3
Target gene
FNBP1
miRNAs that regulate target gene
hsa-mir-9-5p ; hsa-mir-128-3p ; hsa-mir-192-5p ; hsa-mir-21-5p ; hsa-mir-615-3p ; hsa-mir-106b-5p ; hsa-mir-25-3p ; hsa-mir-16-5p ; hsa-mir-510-3p ; hsa-mir-580-3p ; hsa-mir-7974 ; hsa-mir-4687-3p ; hsa-mir-494-3p ; hsa-mir-4635 ; hsa-mir-4677-3p ; hsa-mir-6504-5p ; hsa-mir-3064-5p ; hsa-mir-892b ; hsa-mir-4762-3p ; hsa-mir-183-3p ; hsa-mir-610 ; hsa-mir-4680-3p ; hsa-mir-5187-3p ; hsa-mir-4427 ; hsa-mir-345-3p ; hsa-mir-563 ; hsa-mir-380-5p ; hsa-mir-4528 ; hsa-mir-8485 ; hsa-mir-6516-5p ; hsa-mir-4459 ; hsa-mir-4665-5p ; hsa-mir-1275 ; hsa-mir-455-3p ; hsa-mir-4525 ; hsa-mir-5010-5p ; hsa-mir-7111-5p ; hsa-mir-6870-5p ; hsa-mir-4723-5p ; hsa-mir-5698 ; hsa-mir-625-5p ; hsa-mir-6825-5p ; hsa-mir-25-5p ; hsa-mir-658 ; hsa-mir-6499-3p ; hsa-mir-4252 ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-6087 ; hsa-mir-6852-5p ; hsa-mir-637 ; hsa-mir-508-5p ; hsa-mir-3145-5p ; hsa-mir-1273a ; hsa-mir-372-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-8073 ; hsa-mir-371b-5p ; hsa-mir-221-5p ; hsa-mir-4793-5p ; hsa-mir-3613-3p
Nearest miRNA
hsa-let-7a-1/Upstream/18196; hsa-mir-12126/Downstream/353520;
Nearest TSS
ENST00000422679/Upstream/8494; ENST00000414926/Downstream/28376;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/1862, chr9-CpG: 26/Downstream/2204
Upstream sequence
GTTCTTTTAAAATTAGTCATCTTACAACACAACAGTATTCTAGCACGGTGGCGAAGTGACAGGCGGCAGATACGGGGGAGGAAGGAGACGTTCACGGGAA
Downstream sequence
ATTCCACATTCTACTCTATGTGAACTGCTCCAGAAAAATACAGACATGATTTCACAGTAGGATTCCCAGAGTAAATGATGATACATAGGACAACTGACCT
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
Curate