Basic Information
VIS ID
TVIS30014228
Fusion event
HIV-ADA2 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q11.1
Reference genome
GRCh37/hg19
Start
17660712/17179822 (Hg38)
End
17660712/17179822 (Hg38)
Orient
+
Location type
UTR3
Target gene
ADA2
miRNAs that regulate target gene
hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-6788-5p ; hsa-mir-1273h-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-3656 ; hsa-mir-1251-3p ; hsa-mir-6087 ; hsa-mir-6089 ; hsa-mir-1825 ; hsa-mir-520f-3p ; hsa-mir-302c-3p ; hsa-mir-3622a-5p ; hsa-mir-3190-5p ; hsa-mir-3606-5p ; hsa-mir-3675-3p ; hsa-mir-377-5p ; hsa-mir-3926 ; hsa-mir-4537 ; hsa-mir-455-3p ; hsa-mir-4684-5p ; hsa-mir-4786-5p ; hsa-mir-4793-3p ; hsa-mir-548s ; hsa-mir-6086 ; hsa-mir-6499-3p ; hsa-mir-6516-5p ; hsa-mir-6771-3p ; hsa-mir-6849-3p ; hsa-mir-7703
Nearest miRNA
hsa-let-7a-3/Downstream/584358;
Nearest TSS
ENST00000624155/Upstream/14535; ENST00000497534/Downstream/8905;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/7734, chr22-CpG: 230/Downstream/188753
Upstream sequence
gccggaatggatccagattaaatcggatgctgtatgccctgtggagacatggggtgtacctctaaacgcactgcgttgtaagcaaaggagtgacctgatt
Downstream sequence
taatttgatcttttaaaagtcattctaggccaggccgggtggctcacgcctgtaatcccagtgctttgggaggccgaggcgggtggaccacgaggtcagg
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
Curate