Basic Information
VIS ID
TVIS30014233
Fusion event
HIV-chr2 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
161400347/160543836 (Hg38)
End
161400347/160543836 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-128-1/Upstream/135954; hsa-mir-10b/Downstream/8039107;
Nearest TSS
ENST00000437798/Upstream/50042; ENST00000477952/Downstream/593072;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/49976, chr2-CpG: 39/Downstream/616536
Nearby gene
RBMS1(No orient, 50029)
Upstream sequence
actttatgaattacagaatctgatcttatatctgtactttaaaaaaattttttttttttactattttcttgtactgtcgttggtcaaaagaatgagtaaa
Downstream sequence
ccttccctgatacttctgtagttttatttctccttgtattttatgctgtttttgctttaagaattttcactccagggcctttggtattaatgatctctga
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
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