Basic Information
VIS ID
TVIS30014235
Fusion event
HIV-ZNF814 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.43
Reference genome
GRCh37/hg19
Start
58389122/57877754 (Hg38)
End
58389122/57877754 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA19A
Target gene
ZNF814
miRNAs that regulate target gene
hsa-mir-504-5p ; hsa-mir-193b-3p ; hsa-mir-26a-5p
Nearest miRNA
hsa-let-7e/Upstream/2489512; hsa-mir-10394/Downstream/456934;
Nearest TSS
ENST00000633603/Upstream/6095; ENST00000601162/Downstream/11026;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/27562, chr19-CpG: 29/Downstream/10823
Upstream sequence
ctggtctcgaactcctgacctcgtaatcctcccacctcggcctcccaaagtgctaaaactacaggcatgaggcaccgcgcccagccAGCTTAAAGtatct
Downstream sequence
taattccctcctttttcttcaactagtgtgggttgatatctacccctagggctataatgttggtaaaacaaattacatctgatattctacacatgtcatc
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
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