Basic Information
VIS ID
TVIS30014244
Fusion event
HIV-chr17 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
p11.1
Reference genome
GRCh37/hg19
Start
22258591/22759264 (Hg38)
End
22258591/22759264 (Hg38)
Orient
+
Nearest miRNA
hsa-mir-1180/Upstream/3414690; hsa-mir-10226/Downstream/4534646;
Nearest TSS
ENST00000595228/Upstream/66430; ENST00000583786/Downstream/4240661;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/66582, chr17-CpG: 114/Downstream/3971764
Upstream sequence
actcacagagttgaacactccttttgagagcgcagttttgaaactctctttctctggaatctgcaaggggacatgcagacctctttgaaggtttcgttgg
Downstream sequence
aaacggaatcatcttcacataaaaattacacagaagcattctcaggaactccttggtgatgtttgtattcaacttccagagttgaactttccttcggaaa
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
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