Basic Information
VIS ID
TVIS30014246
Fusion event
HIV-RDH13 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.42
Reference genome
GRCh37/hg19
Start
55563164/55051796 (Hg38)
End
55563164/55051796 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA19A
Target gene
RDH13
miRNAs that regulate target gene
hsa-mir-155-5p ; hsa-mir-6516-5p ; hsa-mir-455-3p ; hsa-mir-650 ; hsa-mir-3612 ; hsa-mir-6499-3p ; hsa-mir-298 ; hsa-mir-1827 ; hsa-mir-4537 ; hsa-mir-5186 ; hsa-mir-1247-3p ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-495-5p ; hsa-mir-3680-3p ; hsa-mir-557 ; hsa-mir-507 ; hsa-mir-4480 ; hsa-mir-450b-5p ; hsa-mir-4539 ; hsa-mir-1292-3p ; hsa-mir-3691-3p ; hsa-mir-5585-3p ; hsa-mir-6738-3p ; hsa-mir-5001-3p ; hsa-mir-4727-5p ; hsa-mir-6778-3p ; hsa-mir-3182 ; hsa-mir-4715-3p ; hsa-mir-6869-5p ; hsa-mir-1200 ; hsa-mir-1227-3p ; hsa-mir-365b-5p ; hsa-mir-365a-5p ; hsa-mir-8052 ; hsa-mir-3199 ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-3653-5p ; hsa-mir-6747-3p ; hsa-mir-544b ; hsa-mir-4324 ; hsa-mir-660-3p ; hsa-mir-552-3p ; hsa-mir-5095 ; hsa-mir-7151-3p ; hsa-mir-6789-3p ; hsa-mir-6872-3p ; hsa-mir-4438 ; hsa-mir-302c-5p ; hsa-mir-4684-5p ; hsa-mir-3143 ; hsa-mir-6849-3p ; hsa-mir-3675-3p ; hsa-mir-6771-3p ; hsa-mir-548c-3p ; hsa-mir-4279 ; hsa-mir-7977 ; hsa-mir-377-3p ; hsa-mir-1976 ; hsa-mir-1228-3p ; hsa-mir-4722-5p ; hsa-mir-4768-3p
Nearest miRNA
hsa-let-7e/Upstream/406413; hsa-mir-10394/Downstream/71429;
Nearest TSS
ENST00000633603/Upstream/6847; ENST00000592318/Downstream/7378;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/18242, chr19-CpG: 69/Downstream/10974
Upstream sequence
ggattacaggtgtgagccaccgcgcccagccTGtttttttttttttctttttatgagagggaagctcactcagtggcccaggctggagtgcagtggcgcg
Downstream sequence
atctcagctcacagcaacctccgccgccagggctcaaacgatcctcccacctcagccttccacatagctgaaccacaggcgcccgacaccacaagcagct
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
Curate