Basic Information
VIS ID
TVIS30014247
Fusion event
HIV-C6orf201 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p25.2
Reference genome
GRCh37/hg19
Start
4124689/4124455 (Hg38)
End
4124689/4124455 (Hg38)
Orient
+
Location type
Intronic
Target gene
C6orf201
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-4781-3p ; hsa-mir-6505-5p ; hsa-mir-554 ; hsa-mir-205-5p
Nearest miRNA
hsa-mir-4645/Upstream/1270348; hsa-mir-10398/Downstream/1023778;
Nearest TSS
ENST00000381078/Upstream/2523; ENST00000527831/Downstream/9327;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/44968, chr6-CpG: 53/Downstream/10486
Upstream sequence
GTCTATCAGTGGGGAAAATACCTCTGAACAAAACTAGAAATCTCTTCAGTGGTAAAAACCATATGCTCCCTAGAAGGCTGCAATCATCAGCACAGTTTAC
Downstream sequence
CATCACATAAGCATAAGTCACTGGACAATCTGATACCCTAAAGGTGGTTATTAGGtgcttgtaatgataaaaattggaaacagcctagggttccagcagt
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
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