Basic Information
VIS ID
TVIS30014249
Fusion event
HIV-ZMPSTE24 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p34.2
Reference genome
GRCh37/hg19
Start
40744277/40278605 (Hg38)
End
40744277/40278605 (Hg38)
Orient
-
Location type
Intronic
Target gene
ZMPSTE24
miRNAs that regulate target gene
hsa-mir-98-5p ; hsa-mir-124-3p ; hsa-mir-141-3p ; hsa-mir-1305 ; hsa-mir-30a-5p ; hsa-mir-30b-5p ; hsa-mir-30c-5p ; hsa-mir-30d-5p ; hsa-mir-30e-5p ; hsa-mir-3973 ; hsa-mir-4686 ; hsa-mir-520g-3p ; hsa-mir-520h ; hsa-mir-548a-5p ; hsa-mir-548ab ; hsa-mir-548ad-5p ; hsa-mir-548ae-5p ; hsa-mir-548ak ; hsa-mir-548am-5p ; hsa-mir-548ap-5p ; hsa-mir-548aq-5p ; hsa-mir-548ar-5p ; hsa-mir-548as-5p ; hsa-mir-548au-5p ; hsa-mir-548ay-5p ; hsa-mir-548b-5p ; hsa-mir-548bb-5p ; hsa-mir-548c-5p ; hsa-mir-548d-5p ; hsa-mir-548h-5p ; hsa-mir-548i ; hsa-mir-548j-5p ; hsa-mir-548o-5p ; hsa-mir-548w ; hsa-mir-548y ; hsa-mir-559 ; hsa-mir-607
Nearest miRNA
hsa-mir-12136/Upstream/2189276; hsa-mir-101-1/Downstream/475750;
Nearest TSS
ENST00000473358/Upstream/20366; ENST00000474142/Downstream/12040;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/20267, chr1-CpG: 60/Downstream/24909
Upstream sequence
cgagatcgcgccactgcactccagcctgggcgacagagtgagactccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaGAAtatctcgtgtaatcca
Downstream sequence
tcatctaacccaatgaggtagatattaggctcgcttcataaataggaaactaaagcttaaagaaattaagaaagttttctaaattgacagaactaataca
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
Curate