Basic Information
VIS ID
TVIS30014251
Fusion event
HIV-TRA integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
22216566/21748282 (Hg38)
End
22216566/21748282 (Hg38)
Orient
-
Location type
Intronic
Target gene
TRA
Nearest miRNA
hsa-mir-6717/Upstream/724896; hsa-mir-1185-1/Downstream/1208668;
Nearest TSS
ENST00000550708/Upstream/12130; ENST00000390427/Downstream/896;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/236725, chr14-CpG: 40/Downstream/840733
Nearby gene
OR4E1(No orient, 77334)
Upstream sequence
ATCTCAATCTGTAGTCTGATGTTTCCTGAGATGTTTCCTCTTTTATGTCAATACTTTGCAATAAGTAAGCCACATATCCGTAATTTCAGATGATCTGTTC
Downstream sequence
TTCCAGAGGAAAATATTTCAGAGTGCATGTCAGATTTTTCATCACAATCTATAGGCTAAACTCTTTCCTTTCATTAGACCAATATTATTAACTCATGGAA
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
Curate