Basic Information
VIS ID
TVIS30014263
Fusion event
HIV-PRDM2 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p36.21
Reference genome
End
14050073/13723578 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-12136/Upstream/1144555; hsa-mir-101-1/Downstream/3135371;
Nearest cancer related gene
PRDM2(TSG, No orient, 0)
Upstream sequence
AACTGGAGAAAGGAATTGGACGTGACAGATTTTGAAGGATCAGCAGCAGGGTTTGGCTCTGTTGACCACCCTCACTTCCTGGAGTCTTCCCCAGCTTTGG
Downstream sequence
TGATGCCATGTGCTTGGTGCCTCTTTGGCTCTGCGATGACTTCTAGGACTGGGACTCATTTGCTGTGCTTCTTCTTCCGTTTCATTCTTTGATAAGGGCA
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
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