Basic Information
VIS ID
TVIS30014265
Fusion event
HIV-chr19 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.12
Reference genome
GRCh37/hg19
Start
36421169/35930267 (Hg38)
End
36421169/35930267 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA19A
Nearest miRNA
hsa-mir-10395/Upstream/584640; hsa-let-7e/Downstream/3479356;
Nearest TSS
ENST00000633603/Upstream/21972; ENST00000585876/Downstream/5091;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/29580, chr19-CpG: 35/Downstream/1241
Nearby gene
LRFN3(No orient, 6853)
Upstream sequence
AGACAACCACATATTATGTCCCTTCTGATAGGAGATCTTAATATTATCCCTGAAGTATACTTAACCCCaaactgaatgtgtatctgactcagcctctaga
Downstream sequence
tctaccagtttgcaagacatacagaggatggcagaacatattaaaggacaccaagaggggaaaccagtcaaatcagactgAGAAGAGATTATTTATAGGT
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
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