Basic Information
VIS ID
TVIS30014270
Fusion event
HIV-TRA integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q11.2
Reference genome
End
22216566/21748282 (Hg38)
Orient
-
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-6717/Upstream/724896; hsa-mir-1185-1/Downstream/1208668;
Nearby gene
OR4E1(No orient, 77334)
Upstream sequence
ATCTCAATCTGTAGTCTGATGTTTCCTGAGATGTTTCCTCTTTTATGTCAATACTTTGCAATAAGTAAGCCACATATCCGTAATTTCAGATGATCTGTTC
Downstream sequence
TTCCAGAGGAAAATATTTCAGAGTGCATGTCAGATTTTTCATCACAATCTATAGGCTAAACTCTTTCCTTTCATTAGACCAATATTATTAACTCATGGAA
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
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