Basic Information
VIS ID
TVIS30014274
Fusion event
HIV-KDM7A integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q34
Reference genome
GRCh37/hg19
Start
139815656/140115856 (Hg38)
End
139815656/140115856 (Hg38)
Orient
+
Location type
Intronic
Target gene
KDM7A
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-26b-5p ; hsa-mir-3692-3p ; hsa-mir-6875-3p ; hsa-mir-6826-3p ; hsa-mir-539-5p ; hsa-mir-3124-3p ; hsa-mir-6756-3p ; hsa-mir-3127-3p ; hsa-mir-5571-5p ; hsa-mir-137
Nearest miRNA
hsa-mir-10399/Upstream/1071699; hsa-mir-11400/Downstream/2358671;
Nearest TSS
ENST00000635602/Upstream/23715; ENST00000495590/Downstream/3286;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/52411, chr7-CpG: 247/Downstream/59755
Upstream sequence
ccccctctgtgagaaacacccaagaattatcaataaaaaaataaatttaaaaaaaaTaaataaataaaaaaaaataaaacattaatagtacaagaaaagt
Downstream sequence
aaaaaaaaaaaataaatgtcatacaatatttttatcataaaaaaaaaaggcttatacacatatgaaaaaaactacccgattctatcaataatcagggaaa
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
Curate