Basic Information
VIS ID
TVIS30014277
Fusion event
HIV-STRADA integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
61810396/63733036 (Hg38)
End
61810396/63733036 (Hg38)
Orient
-
Location type
Intronic
Target gene
STRADA
Nearest miRNA
hsa-mir-10226/Upstream/788724; hsa-mir-1250/Downstream/767738;
Nearest TSS
ENST00000595228/Upstream/4623; ENST00000581135/Downstream/8725;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/31663, chr17-CpG: 60/Downstream/8288
Nearest cancer related gene
STRADA(TSG, No orient, 0)
Upstream sequence
caatgcaatggtgtggtctcggctcactgcaacctccacctcccaggttcatgcgattctcctgcctcggcctcccaagtagctgggattacaggcaccc
Downstream sequence
gccaccacacccagctagtttttttgtatttttagtagagacagggttttaccatgttggccaggctaatcttaaactcctgacctcaggtgatccgccc
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
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