Basic Information
VIS ID
TVIS30014282
Fusion event
HIV-chr11 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
118710843/118840134 (Hg38)
End
118710843/118840134 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA11B
Nearest miRNA
hsa-mir-10392/Upstream/196055; hsa-let-7a-2/Downstream/70574;
Nearest TSS
ENST00000527297/Upstream/48880; ENST00000292174/Downstream/43632;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/47817, chr11-CpG: 45/Downstream/70354
Nearby gene
CXCR5(No orient, 43632)
Upstream sequence
cggatcacaaggtcaagagatcgagaccatcctggctaaccccgtgaaaccccgtctctactaaaaatacaaaaaattagccgggcgtggtggcgggtgc
Downstream sequence
ctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccaggaggcagagcttgcagtgagccgagatcgcgccactgcactccagcct
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
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