Basic Information
VIS ID
TVIS30014290
Fusion event
HIV-LOC100996351 integration
Validated
Yes
Detection method
invPCR
Data source
download(RID)
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2007
PubMed ID
17262715
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
3143794/3143796 (Hg38)
End
3143794/3143796 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA19B
Target gene
LOC100996351
Nearest miRNA
hsa-mir-1227/Upstream/513003; hsa-let-7e/Downstream/817618;
Nearest TSS
ENST00000633603/Upstream/7354; ENST00000586082/Downstream/6044;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/21078, chr19-CpG: 27/Downstream/19047
Upstream sequence
actcaaacagaactgagtttgaatcccagtctgccactcaccaggaccattgaaggaattgtgcgacccacagcaattccctcaacggccccgagactga
Downstream sequence
gtttccccacatggaaacagggctaagagttgtccctctcttggccaggcgcagtggctcacgcctgtaatcccagcactttgggaggacgaggcgggtg
Reference
Ikeda, T., et al. Recurrent HIV-1 integration at the BACH2 locus in resting CD4+ T cell populations during effective highly active antiretroviral therapy. J Infect Dis,2007, 195(5): 716-725.
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